The story follows a young scientist in the contemporary world, who actually came from the world of dwarves, thanks to a magic potion, held by the Big Eater, ruler of the dwarves. The dwarf kingdom, Shuflandia, exists in a cellar of a library, and only the most obedient get the chance to grow to king size and inhabit the larger world. Once there, nobody wants to return to Shuflandia. Also, there are no women in Shuflandia.
Mary and her friend, Rachel, are new students at St. Francis Academy, a boarding school run by the iron fist of Mother Superior. The immature teens grow bored and begin playing pranks on both the unsuspecting nuns and their unpleasant classmates, becoming a constant thorn in Mother Superior's side. However, as the years pass, Mary and Rachel slowly mature and begin to see the nuns in a different light.